Population Genomics Directed Dissection of Bacterial Pathogens

Our research strategy leverages bacterial genomes from real-world clinical isolates to identify mutations driving key adaptive traits, including antibiotic resistance, transmission, and virulence. We then apply advanced experimental microbiology approaches to dissect the functional consequences of these mutations. By integrating genomic and functional insights, we aim to uncover bacterial processes that can be targeted for the development of novel diagnostics, therapeutics, and public health interventions.


Evolution of Transmissibility 

Why are some bacterial strains exceptionally successful in transmission compared to their phylogenetic neighbors? What evolutionary processes drive the emergence of highly transmissible strains?

a scanning image of a human cell

Canonical and Non-canonical Antibiotic Resistance 

Drug-resistance evolution of Mycobacteria in clinical settings: the gaps in our knowledge are costing us.

a scanning image of a human cell

The Rising Cousins: Non-tuberculous Mycobacteria (NTM) 

What ecological and evolutionary factors drive the recent expansion of NTMs?

a scanning image of a human cell